PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016475122.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 449aa    MW: 51099.1 Da    PI: 7.352
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016475122.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.92.4e-10261031598
                     -EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  15 rlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                       ++p +fa+++ ++  ++  + le +sg++Wev++    + g++ l+ GW++F +   +  g f++F ++ rs f  +v+vf+
  XP_016475122.1  26 AQRIPEDFASRYCKNMLNP--VYLEVPSGEVWEVEV--VHSEGQICLGIGWQDFSDFYSISCGHFLMFGYNARSHF--NVTVFD 103
                     4589********5454444..***************..999999**************************999999..888887 PP

2B357.72.2e-18226310491
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE. CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefe 91 
                      + ps+v++ ++l++p kfa+++ +++++  +l+l+ + +  W+vk+  + + g   +t GWk Fv +n+Lk+gD++v++++++ +   
  XP_016475122.1 226 FMHPSYVTRPHNLSIPLKFARKYFMQNRG--KLVLRVPGSGFWTVKC--TLRTGNAKITCGWKAFVLDNKLKSGDVCVLEVIKDtKLLL 310
                     5789*******************777555..7***************..666666779**********************998744443 PP

3B347.43.6e-15355442496
                     E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
              B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      + ps+v+  + l++++  a+++   +++  +++l+ ++ rsW +++++  k gr  l +GWk+Fv++n +k gD++vF+ ++r++  ++v +
  XP_016475122.1 355 PMQPSYVSGPS-LTISRVIASKFF--PTRYSDVVLQVPNKRSWALNCTVGTKNGR--LNSGWKKFVQDNSIKIGDVCVFEQVSRTKLLFNVYI 442
                     56677777776.999999998886..345559***************77555555..***********************6665555555555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.61612105IPR003340B3 DNA binding domain
SMARTSM010190.001813105IPR003340B3 DNA binding domain
SuperFamilySSF1019362.94E-1416112IPR015300DNA-binding pseudobarrel domain
CDDcd100171.58E-820103No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1425105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-24215317IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.1E-22216316IPR015300DNA-binding pseudobarrel domain
CDDcd100173.49E-18221317No hitNo description
SMARTSM010199.7E-14222319IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52223319IPR003340B3 DNA binding domain
PfamPF023623.7E-16225308IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-23344443IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20345443IPR015300DNA-binding pseudobarrel domain
CDDcd100175.13E-18350444No hitNo description
PROSITE profilePS5086312.111351446IPR003340B3 DNA binding domain
SMARTSM010192.7E-11352446IPR003340B3 DNA binding domain
PfamPF023622.2E-13356443IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MYCQLYRSAT VLIQRCMKLS AYFLSAQRIP EDFASRYCKN MLNPVYLEVP SGEVWEVEVV  60
HSEGQICLGI GWQDFSDFYS ISCGHFLMFG YNARSHFNVT VFDLSASEIE YPTKEIESDD  120
SIDISDVVEH SVENLSHGPL GQERKRKRQE RESEDDIPVN VQTKVIEEEE SQGNVVSLER  180
SEGCREQEQQ SNIITSKSDT ERDEERAENY QRAKAFKSKN PFIISFMHPS YVTRPHNLSI  240
PLKFARKYFM QNRGKLVLRV PGSGFWTVKC TLRTGNAKIT CGWKAFVLDN KLKSGDVCVL  300
EVIKDTKLLL IDVTIFRGVS DSTNESINPE PSVPCSPAYQ RAKAFTSENP FFIYPMQPSY  360
VSGPSLTISR VIASKFFPTR YSDVVLQVPN KRSWALNCTV GTKNGRLNSG WKKFVQDNSI  420
KIGDVCVFEQ VSRTKLLFNV YIFPAVEGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1619531721141B3 domain-containing transcription factor VRN
4i1k_B1e-1619531721141B3 domain-containing transcription factor VRN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2154042e-38AC215404.2 Solanum lycopersicum cultivar Heinz 1706 chromosome 2 clone C02HBa0163K16, complete sequence.
GenBankHG9755142e-38HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016475122.10.0PREDICTED: B3 domain-containing transcription factor VRN1-like
TrEMBLM0ZSN01e-160M0ZSN0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000071991e-160(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7591893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-19related to vernalization1 1